This page contains updated data regarding segmental duplications in Stickleback Genome Assembly (Broad Institute v1.0).   WGACs are genomic duplications detected based on pairwise alignment in genome assembly with length >1000bp and >90% identity. WSSD are genomic duplications detected based on the depth of coverage using Stickleback WGS reads (total of 6,018,733)

Data Access

This allows browsing of the genome.

Inter and Intra chromosome duplications from the perspective of individual scaffolds. The assembly duplications (red and blue for inter and intra chromosome respectively) are shown at various length thresholds.  

Analysis on various KB-Group Breakdowns 

Analysis on distribution of number of pairs at different length categories. 

Analysis on distribution of number of pairs at different Percent Similarity. 

Histograph shows the non redundant Seq Dup distribution on each chromosomes. 

Histograph show the Seg Dup ratio on each chromosome 

Length vs Identity scatter plot. 

Kimura vs Identity scatter plot. 

contains WGAC and WSSD Data 

contains data not categorized