This page contains updated data regarding recent segmental duplications in Chimp(panTro2 Mar 2006) assembly. It focuses on genomic duplications >1000bp and >90% identity.
Data AccessUCSC Genome Browser
This allows browsing of the Chimp genome.Parasight Views showing Inter & Intra Duplication
Inter and Intra chromosome duplications from the perspective of individual scaffolds. The assembly duplications (red and blue for inter and intra chromosome respectively) are shown at various length thresholds.Statistics
Analysis on various KB-Group BreakdownsWGAC Length Distribution
Analysis on distribution of number of pairs at different length categories.WGAC Similarity distributions
Analysis on distribution of number of pairs at different Percent Similarity.Non-redundant Duplication Ratios
Histograph shows the non redundant Seq Dup distribution on each chromosomes.
Histograph show the Seg Dup ratio on each chromosome
Histograph of total Seg Dup and Chromosome length for each chromosome
A flat text file contains chromosome location and coresponding cordinates for all WGAC Seg Dup pairs.Data for pantro2 wssd
A flat text file contains chromosome location and coresponding cordinates for WSSDs.