This page contains updated data regarding recent segmental duplications in Chimp(panTro2 Mar 2006) assembly. It focuses on genomic duplications >1000bp and >90% identity.
Data Access
UCSC Genome BrowserThis allows browsing of the Chimp genome.
Parasight Views showing Inter & Intra DuplicationInter and Intra chromosome duplications from the perspective of individual scaffolds. The assembly duplications (red and blue for inter and intra chromosome respectively) are shown at various length thresholds.
StatisticsAnalysis on various KB-Group Breakdowns
WGAC Length DistributionAnalysis on distribution of number of pairs at different length categories.
WGAC Similarity distributionsAnalysis on distribution of number of pairs at different Percent Similarity.
Non-redundant Duplication Ratios Histograph shows the non redundant Seq Dup distribution on each chromosomes.
Histograph show the Seg Dup ratio on each chromosome
Histograph of total Seg Dup and Chromosome length for each chromosome
A flat text file contains chromosome location and coresponding cordinates for all WGAC Seg Dup pairs.
Data for pantro2 wssdA flat text file contains chromosome location and coresponding cordinates for WSSDs.